PNW Quarterly Pubs

Hi Rhonda,

Here is what I came up with by way of instructions so far:

https://ems-team.usda.gov/sites/fs-rd-pnwcap/QuarterlyPubUpdate/Home.aspx

I have ten total tasks for the person to perform that gets you to the ability to generate a bibliography using whatever template you wish.

The attached spreadsheet could be used as something of a template to save a few steps.

I have a few screen captures of specific things that might benefit from illustration, but I’m not sure how to / if I want to include them.

This is a really interesting graphic here –

http://fsweb.wo.fs.fed.us/rd/images/adhoc/rits_components.jpg

Says “RITS can be used for accomplishment reporting.” It just seems really difficult to do accomplishment reporting if you can’t export data or sort it.

Got that here: here: http://fsweb.wo.fs.fed.us/rd/researchtools/rits/index.php

Do you want to sit down this week and go through the steps?

I keep thinking there has to be a better way than what I have come up with. I am curious to see if I can teach myself the computer coding that would allow us to do this a bit more elegantly in the 6 weeks I have left.

-Tanner

From: Jessel, Tanner – FS
Sent: Monday, April 17, 2017 5:26 PM
To: Mazza, Rhonda L -FS < >
Subject: FW: PNW Quarterly Pubs

Hi Rhonda,

I have been playing around with a few ideas on the process to get the data. Forwarded message is the output; immediately below are some notes about some issues encountered with the process to get to the output.

There have been some vexing problems with the project I should note a few of the issues encountered. A few notes below:

1. There are 178 items in my example

a. Visit “Product Search” (https://apps.fs.usda.gov/rnd/rits/searchProduct/productSearch)

b. Earliest Product_ID in my spreadsheet: 75826, entered on 09-12-2016

c. Latest Product_ID in my spreadsheet: 84135, entered on 02-28-2017

2. Of these, it is important to note that each item has a “Status” associated with it

a. 29 are “Approved” (I can’t tell what this means)

b. 1 is “Non-Treesearch” (a magazine article)

c. 1 is “Not yet Submitted for Review” (this is a 2016 publication)

d. 6 are “Pending Reviewer” (5 are “JRNL and 1 is GTR)

e. 140 are “Published to Web (I assume that this means “Published to TreeSearch”

3. It gets a bit interesting here…

a. I collected all of the digital object identifiers.

b. Not all of the items are from 2016

i. 1 – 1985

ii. 1 – 2005

iii. 1 – 2008

iv. 4- 2013

c. Maybe this does not matter if our goal is to communicate “New Items in TreeSearch This Quarter”

i. If the goal is only, “New items published in this quarter” then it does matter

4. I added the column “DOI” and grabbed this information from the TreeSearch XML – painfully, by hand.

a. 96 items have a DOI (most are journal articles; 3 are “Forest Service” GTR’s).

b. 29 items do not have a DOI

i. 11 “Miscellaneous”

ii. 2 Thesis

iii. 3 Book

iv. 6 JRNL

Apart from figuring out when things were actually published, here is where the DOI seems to have some bearing on the “semi-automated” component of the quarterly publication update reporting / e-mail update project.

I used the DOI to visit all of the online resources that had a doi (do this by combining http://doi.org/ with the actual doi).

· I collected each resource one-by-one to Mendeley Web by using the Mendeley Firefox Add-on

· I synced my Mendeley Web to Mendeley Desktop

Mendeley desktop has an interesting feature: it lets you view your collected items by journal.

That gave me an idea: how about grouping quarterly publications by journal?

I copied and pasted some examples below – you can see that the publications for the time range (September 2016 – March 2017) appear in a variety of journals.

I think this might be an approach that adds value for the reader over just an alpha list by author.

One thing I don’t like is there’s no link back to the TreeSearch publication. This could be manually added in, but that’s more painstaking manual labor.

Also I am attaching the “Station Style” HTML output for the citations from EndNote Desktop Application. This was generated with the forest-service-endnote-style CSL file that Sean Gordon created. It might need more work.

Same deal, sorted by Journal, and then sorted by Author.

We can discuss more in person, just wanted to write some notes down here to share.

I’m also attaching my spreadsheet. It is really a mess, I think the bottom line out of all this is there ought to be more features in RITS to permit PNW export all of the information that is entered in to RITS.

An alternative approach might be to get a program that scrapes the content from the TreeSearch XML documents – beyond my skill level at the moment but it’s an interesting problem to look at.

For now, the process I’ve come up with to arrive at the formatted bibliography below is probably more labor intensive than you want, but I think it provides info your readers would probably want to know, and it identifies publications that may not actually be “new” this quarter, just “new” to TreeSearch this quarter.

-Tanner

From: Tanner Jessel [mailto:]
Sent: Monday, April 17, 2017 9:55 AM
To: Jessel, Tanner – FS < >
Subject: PNW Quarterly Pubs

Agriculture and Human Values

Hummel, Susan Stevens. “E. N. Anderson: Caring for Place: Ecology, Ideology, and Emotion in Traditional Landscape Management.” Agriculture and Human Values 33, no. 2 (June 29, 2016): 495–96. doi:10.1007/s10460-016-9691-6.

Aquatic Conservation: Marine and Freshwater Ecosystems

Flitcroft, Rebecca L., Daniel L. Bottom, Karen L. Haberman, Ken F. Bierly, Kim K. Jones, Charles A. Simenstad, Ayesha Gray, et al. “Expect the Unexpected: Place-Based Protections Can Lead to Unforeseen Benefits.” Aquatic Conservation: Marine and Freshwater Ecosystems 26, no. S1 (June 2016): 39–59. doi:10.1002/aqc.2660.

Juffe-Bignoli, Diego, Ian Harrison, Stuart HM Butchart, Rebecca Flitcroft, Virgilio Hermoso, Harry Jonas, Anna Lukasiewicz, et al. “Achieving Aichi Biodiversity Target 11 to Improve the Performance of Protected Areas and Conserve Freshwater Biodiversity.” Aquatic Conservation: Marine and Freshwater Ecosystems 26, no. S1 (June 2016): 133–51. doi:10.1002/aqc.2638.

Juffe-Bignoli, Diego, Ian Harrison, Stuart HM Butchart, Rebecca Flitcroft, Virgilio Hermoso, Harry Jonas, Anna Lukasiewicz, et al. “Achieving Aichi Biodiversity Target 11 to Improve the Performance of Protected Areas and Conserve Freshwater Biodiversity.” Aquatic Conservation: Marine and Freshwater Ecosystems 26, no. S1 (June 2016): 133–51. doi:10.1002/aqc.2638.

Atmospheric Chemistry and Physics

Yokelson, R. J., I. R. Burling, J. B. Gilman, C. Warneke, C. E. Stockwell, J. de Gouw, S. K. Akagi, et al. “Coupling Field and Laboratory Measurements to Estimate the Emission Factors of Identified and Unidentified Trace Gases for Prescribed Fires.” Atmospheric Chemistry and Physics 13, no. 1 (January 7, 2013): 89–116. doi:10.5194/acp-13-89-2013.

Chakrabarty, Rajan K., Madhu Gyawali, Reddy L. N. Yatavelli, Apoorva Pandey, Adam C. Watts, Joseph Knue, Lung-Wen A. Chen, et al. “Brown Carbon Aerosols from Burning of Boreal Peatlands: Microphysical Properties, Emission Factors, and Implications for Direct Radiative Forcing.” Atmospheric Chemistry and Physics 16, no. 5 (March 9, 2016): 3033–40. doi:10.5194/acp-16-3033-2016.

BioScience

Arismendi, Ivan, and Brooke E. Penaluna. “Examining Diversity Inequities in Fisheries Science: A Call to Action.” BioScience 66, no. 7 (July 1, 2016): 584–91. doi:10.1093/biosci/biw041.

Canadian Journal of Forest Research

Eskelson, Bianca N.I., Vicente J. Monleon, and Jeremy S. Fried. “A 6 Year Longitudinal Study of Post-Fire Woody Carbon Dynamics in California’s Forests.” Canadian Journal of Forest Research 46, no. 5 (May 2016): 610–20. doi:10.1139/cjfr-2015-0375.

Caouette, J.P., E.A. Steel, P.E. Hennon, P.G. Cunningham, C.A. Pohl, and B.A. Schrader. “Influence of Elevation and Site Productivity on Conifer Distributions across Alaskan Temperate Rainforests.” Canadian Journal of Forest Research 46, no. 2 (February 2016): 249–61. doi:10.1139/cjfr-2015-0283.

Poudel, K.P., and H. Temesgen. “Methods for Estimating Aboveground Biomass and Its Components for Douglas-Fir and Lodgepole Pine Trees.” Canadian Journal of Forest Research 46, no. 1 (January 2016): 77–87. doi:10.1139/cjfr-2015-0256.

Canadian Journal of Remote Sensing

Vierling, Lee A., Yanyin Xu, Jan U H Eitel, and John S. Oldow. “Shrub Characterization Using Terrestrial Laser Scanning and Implications for Airborne LiDAR Assessment.” Canadian Journal of Remote Sensing 38, no. 6 (January 11, 2012): 709–22. doi:10.5589/m12-057.

Current Forestry Reports

Vaillant, Nicole M., Crystal A. Kolden, and Alistair M. S. Smith. “Assessing Landscape Vulnerability to Wildfire in the USA.” Current Forestry Reports 2, no. 3 (September 15, 2016): 201–13. doi:10.1007/s40725-016-0040-1.

Disasters

Zahran, Sammy, Samuel D. Brody, Walter Gillis Peacock, Arnold Vedlitz, Himanshu Grover, V Sturtevant, RF Brummel, et al. “Social Vulnerability and the Natural and Built Environment: A Model of Flood Casualties in Texas.” Disasters 32, no. 4 (December 2008): 537–60. doi:10.1111/j.1467-7717.2008.01054.x.

Diversity and Distributions

Zahran, Sammy, Samuel D. Brody, Walter Gillis Peacock, Arnold Vedlitz, Himanshu Grover, V Sturtevant, RF Brummel, et al. “Social Vulnerability and the Natural and Built Environment: A Model of Flood Casualties in Texas.” Disasters 32, no. 4 (December 2008): 537–60. doi:10.1111/j.1467-7717.2008.01054.x.

Ecological Applications

Kline, Jeffrey D., Mark E. Harmon, Thomas A. Spies, Anita T. Morzillo, Robert J. Pabst, Brenda C. McComb, Frank Schnekenburger, Keith A. Olsen, Blair Csuti, and Jody C. Vogeler. “Evaluating Carbon Storage, Timber Harvest, and Habitat Possibilities for a Western Cascades (USA) Forest Landscape.” Ecological Applications 26, no. 7 (October 2016): 2044–59. doi:10.1002/eap.1358.

Ecological Indicators

Kline, Jeffrey D., Mark E. Harmon, Thomas A. Spies, Anita T. Morzillo, Robert J. Pabst, Brenda C. McComb, Frank Schnekenburger, Keith A. Olsen, Blair Csuti, and Jody C. Vogeler. “Evaluating Carbon Storage, Timber Harvest, and Habitat Possibilities for a Western Cascades (USA) Forest Landscape.” Ecological Applications 26, no. 7 (October 2016): 2044–59. doi:10.1002/eap.1358.

Ecological Modelling

Bell, David M., and Daniel R. Schlaepfer. “On the Dangers of Model Complexity without Ecological Justification in Species Distribution Modeling.” Ecological Modelling 330 (2016): 50–59. doi:10.1016/j.ecolmodel.2016.03.012.

Ecology

Bansal, Sheel, Constance A. Harrington, and John Bradley St. Clair. “Tolerance to Multiple Climate Stressors: A Case Study of Douglas-Fir Drought and Cold Hardiness.” Ecology and Evolution 6, no. 7 (April 2016): 2074–83. doi:10.1002/ece3.2007.

Burton, Julia I., Deanna H. Olson, and Klaus J. Puettmann. “Effects of Riparian Buffer Width on Wood Loading in Headwater Streams after Repeated Forest Thinning.” Forest Ecology and Management 372 (2016): 247–57. doi:10.1016/j.foreco.2016.03.053.

Cowan, Ariel D., Jane E. Smith, and Stephen A. Fitzgerald. “Recovering Lost Ground: Effects of Soil Burn Intensity on Nutrients and Ectomycorrhiza Communities of Ponderosa Pine Seedlings.” Forest Ecology and Management 378 (2016): 160–72. doi:10.1016/j.foreco.2016.07.030.

Fischer, A Paige, Thomas A Spies, Toddi A Steelman, Cassandra Moseley, Bart R Johnson, John D Bailey, Alan A Ager, et al. “Wildfire Risk as a Socioecological Pathology.” Frontiers in Ecology and the Environment 14, no. 5 (June 2016): 276–84. doi:10.1002/fee.1283.

Flitcroft, Rebecca L., Jeffrey A. Falke, Gordon H. Reeves, Paul F. Hessburg, Kris M. McNyset, and Lee E. Benda. “Wildfire May Increase Habitat Quality for Spring Chinook Salmon in the Wenatchee River Subbasin, WA, USA.” Forest Ecology and Management 359 (2016): 126–40. doi:10.1016/j.foreco.2015.09.049.

Halpern, Charles B., Joseph A. Antos, Donald McKenzie, and Annette M. Olson. “Past Tree Influence and Prescribed Fire Mediate Biotic Interactions and Community Reassembly in a Grassland-Restoration Experiment.” Edited by Lara Souza. Journal of Applied Ecology 53, no. 1 (February 2016): 264–73. doi:10.1111/1365-2664.12570.

Hessburg, Paul F., Thomas A. Spies, David A. Perry, Carl N. Skinner, Alan H. Taylor, Peter M. Brown, Scott L. Stephens, et al. “Tamm Review: Management of Mixed-Severity Fire Regime Forests in Oregon, Washington, and Northern California.” Forest Ecology and Management 366 (2016): 221–50. doi:10.1016/j.foreco.2016.01.034.

Hessburg, Paul F., Thomas A. Spies, David A. Perry, Carl N. Skinner, Alan H. Taylor, Peter M. Brown, Scott L. Stephens, et al. “Tamm Review: Management of Mixed-Severity Fire Regime Forests in Oregon, Washington, and Northern California.” Forest Ecology and Management 366 (2016): 221–50. doi:10.1016/j.foreco.2016.01.034.

Hewitt, Rebecca E., Alec P. Bennett, Amy L. Breen, Teresa N. Hollingsworth, D. Lee Taylor, F. Stuart Chapin, and T. Scott Rupp. “Getting to the Root of the Matter: Landscape Implications of Plant-Fungal Interactions for Tree Migration in Alaska.” Landscape Ecology 31, no. 4 (May 14, 2016): 895–911. doi:10.1007/s10980-015-0306-1.

Kelsey, Rick G., Gladwin Joseph, Doug Westlind, and Walter G. Thies. “Ethanol and Acetone from Douglas-Fir Roots Stressed by Phellinus Sulphurascens Infection: Implications for Detecting Diseased Trees and for Beetle Host Selection.” Forest Ecology and Management 360 (2016): 261–72. doi:10.1016/j.foreco.2015.10.039.

Lorenz, Teresa J., Kerri T. Vierling, Jeffrey M. Kozma, and Janet E. Millard. “Foraging Plasticity by a Keystone Excavator, the White-Headed Woodpecker, in Managed Forests: Are There Consequences for Productivity?” Forest Ecology and Management 363 (2016): 110–19. doi:10.1016/j.foreco.2015.12.021.

Maffei, Helen M., Gregory M. Filip, Nancy E. Grulke, Brent W. Oblinger, Ellis Q. Margolis, and Kristen L. Chadwick. “Pruning High-Value Douglas-Fir Can Reduce Dwarf Mistletoe Severity and Increase Longevity in Central Oregon.” Forest Ecology and Management 379 (2016): 11–19. doi:10.1016/j.foreco.2016.07.014.

Reazin, C., S. Morris, J.E. Smith, A.D. Cowan, and A. Jumpponen. “Fires of Differing Intensities Rapidly Select Distinct Soil Fungal Communities in a Northwest US Ponderosa Pine Forest Ecosystem.” Forest Ecology and Management 377 (2016): 118–27. doi:10.1016/j.foreco.2016.07.002.

Slesak, Robert A., Timothy B. Harrington, David H. Peter, Daniel G. DeBruler, Stephen H. Schoenholtz, and Brian D. Strahm. “Effects of Intensive Management Practices on 10-Year Douglas-Fir Growth, Soil Nutrient Pools, and Vegetation Communities in the Pacific Northwest, USA.” Forest Ecology and Management 365 (2016): 22–33. doi:10.1016/j.foreco.2016.01.019.

Varner, J. Morgan, Mary A. Arthur, Stacy L. Clark, Daniel C. Dey, Justin L. Hart, and Callie Jo Schweitzer. “Fire in Eastern North American Oak Ecosystems: Filling the Gaps.” Fire Ecology 12, no. 2 (August 2016): 1–6. doi:10.4996/fireecology.1202001.

White, Alan S., SH Doerr, RPD Walsh, A Shanklin, and JL Jonas. “Presettlement Regeneration Patterns in a Southwestern Ponderosa Pine Stand.” Ecology 66, no. 2 (April 1985): 589–94. doi:10.2307/1940407.

Whittier, Thomas R., and Andrew N. Gray. “Tree Mortality Based Fire Severity Classification for Forest Inventories: A Pacific Northwest National Forests Example.” Forest Ecology and Management 359 (2016): 199–209. doi:10.1016/j.foreco.2015.10.015.

Wright, Clinton S., RJ Mitchell, JJ Hendricks, LR Boring, CW Berisford, J Aurell, A Holder, et al. “Models for Predicting Fuel Consumption in Sagebrush-Dominated Ecosystems.” Rangeland Ecology & Management 66, no. 3 (May 2013): 254–66. doi:10.2111/REM-D-12-00027.1.

Zald, Harold S.J., Thomas A. Spies, Rupert Seidl, Robert J. Pabst, Keith A. Olsen, and E. Ashley Steel. “Complex Mountain Terrain and Disturbance History Drive Variation in Forest Aboveground Live Carbon Density in the Western Oregon Cascades, USA.” Forest Ecology and Management 366 (2016): 193–207. doi:10.1016/j.foreco.2016.01.036.

Ecology and Evolution

Bansal, Sheel, Constance A. Harrington, and John Bradley St. Clair. “Tolerance to Multiple Climate Stressors: A Case Study of Douglas-Fir Drought and Cold Hardiness.” Ecology and Evolution 6, no. 7 (April 2016): 2074–83. doi:10.1002/ece3.2007.

Ecosphere

Atwood, Todd C., Bruce G. Marcot, David C. Douglas, Steven C. Amstrup, Karyn D. Rode, George M. Durner, and Jeffrey F. Bromaghin. “Forecasting the Relative Influence of Environmental and Anthropogenic Stressors on Polar Bears.” Ecosphere 7, no. 6 (June 2016): e01370. doi:10.1002/ecs2.1370.

Gray, Andrew N., Thomas R. Whittier, and Mark E. Harmon. “Carbon Stocks and Accumulation Rates in Pacific Northwest Forests: Role of Stand Age, Plant Community, and Productivity.” Edited by D. P. Peters. Ecosphere 7, no. 1 (January 2016): e01224. doi:10.1002/ecs2.1224.

Ecosystem Services

Schroder, Svetlana A. (Kushch), Sándor F. Tóth, Robert L. Deal, and Gregory J. Ettl. “Multi-Objective Optimization to Evaluate Tradeoffs among Forest Ecosystem Services Following Fire Hazard Reduction in the Deschutes National Forest, USA.” Ecosystem Services 22 (2016): 328–47. doi:10.1016/j.ecoser.2016.08.006.

Environmental Research Letters

Abbott, Benjamin W, Jeremy B Jones, Edward A G Schuur, F Stuart Chapin III, William B Bowden, M Syndonia Bret-Harte, Howard E Epstein, et al. “Biomass Offsets Little or None of Permafrost Carbon Release from Soils, Streams, and Wildfire: An Expert Assessment.” Environmental Research Letters 11, no. 3 (March 1, 2016): 34014. doi:10.1088/1748-9326/11/3/034014.

Fire Ecology

Varner, J. Morgan, Mary A. Arthur, Stacy L. Clark, Daniel C. Dey, Justin L. Hart, and Callie Jo Schweitzer. “Fire in Eastern North American Oak Ecosystems: Filling the Gaps.” Fire Ecology 12, no. 2 (August 2016): 1–6. doi:10.4996/fireecology.1202001.

Fisheries

Penaluna, Brooke E., Alicia Abadía-Cardoso, Jason B. Dunham, Francisco J. García-Dé León, Robert E. Gresswell, Arturo Ruiz Luna, Eric B. Taylor, et al. “Conservation of Native Pacific Trout Diversity in Western North America.” Fisheries 41, no. 6 (June 2, 2016): 286–300. doi:10.1080/03632415.2016.1175888.

Hance, Dalton J., Lisa M. Ganio, Kelly M. Burnett, and Joseph L. Ebersole. “Basin-Scale Variation in the Spatial Pattern of Fall Movement of Juvenile Coho Salmon in the West Fork Smith River, Oregon.” Transactions of the American Fisheries Society 145, no. 5 (September 2, 2016): 1018–34. doi:10.1080/00028487.2016.1194892.

Forest Ecology and Management

Cowan, Ariel D., Jane E. Smith, and Stephen A. Fitzgerald. “Recovering Lost Ground: Effects of Soil Burn Intensity on Nutrients and Ectomycorrhiza Communities of Ponderosa Pine Seedlings.” Forest Ecology and Management 378 (2016): 160–72. doi:10.1016/j.foreco.2016.07.030.

Maffei, Helen M., Gregory M. Filip, Nancy E. Grulke, Brent W. Oblinger, Ellis Q. Margolis, and Kristen L. Chadwick. “Pruning High-Value Douglas-Fir Can Reduce Dwarf Mistletoe Severity and Increase Longevity in Central Oregon.” Forest Ecology and Management 379 (2016): 11–19. doi:10.1016/j.foreco.2016.07.014.

Reazin, C., S. Morris, J.E. Smith, A.D. Cowan, and A. Jumpponen. “Fires of Differing Intensities Rapidly Select Distinct Soil Fungal Communities in a Northwest US Ponderosa Pine Forest Ecosystem.” Forest Ecology and Management 377 (2016): 118–27. doi:10.1016/j.foreco.2016.07.002.

Burton, Julia I., Deanna H. Olson, and Klaus J. Puettmann. “Effects of Riparian Buffer Width on Wood Loading in Headwater Streams after Repeated Forest Thinning.” Forest Ecology and Management 372 (2016): 247–57. doi:10.1016/j.foreco.2016.03.053.

Zald, Harold S.J., Thomas A. Spies, Rupert Seidl, Robert J. Pabst, Keith A. Olsen, and E. Ashley Steel. “Complex Mountain Terrain and Disturbance History Drive Variation in Forest Aboveground Live Carbon Density in the Western Oregon Cascades, USA.” Forest Ecology and Management 366 (2016): 193–207. doi:10.1016/j.foreco.2016.01.036.

Hessburg, Paul F., Thomas A. Spies, David A. Perry, Carl N. Skinner, Alan H. Taylor, Peter M. Brown, Scott L. Stephens, et al. “Tamm Review: Management of Mixed-Severity Fire Regime Forests in Oregon, Washington, and Northern California.” Forest Ecology and Management 366 (2016): 221–50. doi:10.1016/j.foreco.2016.01.034.

Hessburg, Paul F., Thomas A. Spies, David A. Perry, Carl N. Skinner, Alan H. Taylor, Peter M. Brown, Scott L. Stephens, et al. “Tamm Review: Management of Mixed-Severity Fire Regime Forests in Oregon, Washington, and Northern California.” Forest Ecology and Management 366 (2016): 221–50. doi:10.1016/j.foreco.2016.01.034.

Slesak, Robert A., Timothy B. Harrington, David H. Peter, Daniel G. DeBruler, Stephen H. Schoenholtz, and Brian D. Strahm. “Effects of Intensive Management Practices on 10-Year Douglas-Fir Growth, Soil Nutrient Pools, and Vegetation Communities in the Pacific Northwest, USA.” Forest Ecology and Management 365 (2016): 22–33. doi:10.1016/j.foreco.2016.01.019.

Lorenz, Teresa J., Kerri T. Vierling, Jeffrey M. Kozma, and Janet E. Millard. “Foraging Plasticity by a Keystone Excavator, the White-Headed Woodpecker, in Managed Forests: Are There Consequences for Productivity?” Forest Ecology and Management 363 (2016): 110–19. doi:10.1016/j.foreco.2015.12.021.

Kelsey, Rick G., Gladwin Joseph, Doug Westlind, and Walter G. Thies. “Ethanol and Acetone from Douglas-Fir Roots Stressed by Phellinus Sulphurascens Infection: Implications for Detecting Diseased Trees and for Beetle Host Selection.” Forest Ecology and Management 360 (2016): 261–72. doi:10.1016/j.foreco.2015.10.039.

Whittier, Thomas R., and Andrew N. Gray. “Tree Mortality Based Fire Severity Classification for Forest Inventories: A Pacific Northwest National Forests Example.” Forest Ecology and Management 359 (2016): 199–209. doi:10.1016/j.foreco.2015.10.015.

Flitcroft, Rebecca L., Jeffrey A. Falke, Gordon H. Reeves, Paul F. Hessburg, Kris M. McNyset, and Lee E. Benda. “Wildfire May Increase Habitat Quality for Spring Chinook Salmon in the Wenatchee River Subbasin, WA, USA.” Forest Ecology and Management 359 (2016): 126–40. doi:10.1016/j.foreco.2015.09.049.

Forest Policy and Economics

Latta, Gregory S., Darius M. Adams, Kathleen P. Bell, and Jeffrey D. Kline. “Evaluating Land-Use and Private Forest Management Responses to a Potential Forest Carbon Offset Sales Program in Western Oregon (USA).” Forest Policy and Economics 65 (2016): 1–8. doi:10.1016/j.forpol.2016.01.004.

Donovan, Geoffrey H., Lee K. Cerveny, and Demetrios Gatziolis. “If You Build It, Will They Come?” Forest Policy and Economics 62 (2016): 135–40. doi:10.1016/j.forpol.2015.11.002.

Forests

Poudel, Krishna, and Hailemariam Temesgen. “Developing Biomass Equations for Western Hemlock and Red Alder Trees in Western Oregon Forests.” Forests 7, no. 4 (April 21, 2016): 88. doi:10.3390/f7040088.

Frontiers in Ecology and the Environment

Fischer, A Paige, Thomas A Spies, Toddi A Steelman, Cassandra Moseley, Bart R Johnson, John D Bailey, Alan A Ager, et al. “Wildfire Risk as a Socioecological Pathology.” Frontiers in Ecology and the Environment 14, no. 5 (June 2016): 276–84. doi:10.1002/fee.1283.

Frontiers in Plant Science

Syring, John V., Jacob A. Tennessen, Tara N. Jennings, Jill Wegrzyn, Camille Scelfo-Dalbey, and Richard Cronn. “Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome.” Frontiers in Plant Science 7 (April 21, 2016): 484. doi:10.3389/fpls.2016.00484.

Global Change Biology

Littell, Jeremy S., David L. Peterson, Karin L. Riley, Yongquiang Liu, and Charles H. Luce. “A Review of the Relationships between Drought and Forest Fire in the United States.” Global Change Biology 22, no. 7 (July 2016): 2353–69. doi:10.1111/gcb.13275.

Black, Bryan A., Daniel Griffin, Peter van der Sleen, Alan D. Wanamaker, James H. Speer, David C. Frank, David W. Stahle, et al. “The Value of Crossdating to Retain High-Frequency Variability, Climate Signals, and Extreme Events in Environmental Proxies.” Global Change Biology 22, no. 7 (July 2016): 2582–95. doi:10.1111/gcb.13256.

Voelker, Steven L., J. Renée Brooks, Frederick C. Meinzer, Rebecca Anderson, Martin K.-F. Bader, Giovanna Battipaglia, Katie M. Becklin, et al. “A Dynamic Leaf Gas-Exchange Strategy Is Conserved in Woody Plants under Changing Ambient CO 2 : Evidence from Carbon Isotope Discrimination in Paleo and CO 2 Enrichment Studies.” Global Change Biology 22, no. 2 (February 2016): 889–902. doi:10.1111/gcb.13102.

Hydrology and Earth System Sciences

Fu, Congsheng, Guiling Wang, Michael L. Goulden, Russell L. Scott, Kenneth Bible, and Zoe G. Cardon. “Combined Measurement and Modeling of the Hydrological Impact of Hydraulic Redistribution Using CLM4.5 at Eight AmeriFlux Sites.” Hydrology and Earth System Sciences 20, no. 5 (May 17, 2016): 2001–18. doi:10.5194/hess-20-2001-2016.

Inhalation Toxicology

Adetona, Olorunfemi, Timothy E. Reinhardt, Joe Domitrovich, George Broyles, Anna M. Adetona, Michael T. Kleinman, Roger D. Ottmar, and Luke P. Naeher. “Review of the Health Effects of Wildland Fire Smoke on Wildland Firefighters and the Public.” Inhalation Toxicology 28, no. 3 (February 23, 2016): 95–139. doi:10.3109/08958378.2016.1145771.

International Journal of Wildland Fire

Prestemon, Jeffrey P., Uma Shankar, Aijun Xiu, K. Talgo, D. Yang, Ernest Dixon, Donald McKenzie, and Karen L. Abt. “Projecting Wildfire Area Burned in the South-Eastern United States, 2011–60.” International Journal of Wildland Fire 25, no. 7 (2016): 715. doi:10.1071/WF15124.

Journal of Applied Ecology

Halpern, Charles B., Joseph A. Antos, Donald McKenzie, and Annette M. Olson. “Past Tree Influence and Prescribed Fire Mediate Biotic Interactions and Community Reassembly in a Grassland-Restoration Experiment.” Edited by Lara Souza. Journal of Applied Ecology 53, no. 1 (February 2016): 264–73. doi:10.1111/1365-2664.12570.

Journal of Environmental Management

Buotte, Polly C., David L. Peterson, Kevin S. McKelvey, and Jeffrey A. Hicke. “Capturing Subregional Variability in Regional-Scale Climate Change Vulnerability Assessments of Natural Resources.” Journal of Environmental Management 169 (2016): 313–18. doi:10.1016/j.jenvman.2015.12.017.

Journal of Environmental Planning and Management

Buotte, Polly C., David L. Peterson, Kevin S. McKelvey, and Jeffrey A. Hicke. “Capturing Subregional Variability in Regional-Scale Climate Change Vulnerability Assessments of Natural Resources.” Journal of Environmental Management 169 (2016): 313–18. doi:10.1016/j.jenvman.2015.12.017.

Journal of Environmental Studies and Sciences

Batavia, Chelsea, and Michael Paul Nelson. “Heroes or Thieves? The Ethical Grounds for Lingering Concerns about New Conservation.” Journal of Environmental Studies and Sciences, May 6, 2016, 1–9. doi:10.1007/s13412-016-0399-0.

Journal of Field Ornithology

Wilk, Randall J., Martin G. Raphael, and Thomas D. Bloxton. “Nesting Habitat Characteristics of Marbled Murrelets Occurring in near-Shore Waters of the Olympic Peninsula, Washington.” Journal of Field Ornithology 87, no. 2 (June 2016): 162–75. doi:10.1111/jofo.12150.

Journal of Forestry

Zald, Harold S.J., Thomas A. Spies, Mark E. Harmon, and Mark J. Twery. “Forest Carbon Calculators: A Review for Managers, Policymakers, and Educators.” Journal of Forestry 114, no. 2 (March 16, 2016): 134–43. doi:10.5849/jof.15-019.

Reich, Robin M., John E. Lundquist, and Kristina Hughes. “Host-Environment Mismatches Associated with Subalpine Fir Decline in Colorado.” Journal of Forestry Research 27, no. 5 (October 19, 2016): 1177–89. doi:10.1007/s11676-016-0234-1.

Journal of Theoretical Biology

Hamelin, Frédéric M., Linda J.S. Allen, Holly R. Prendeville, M. Reza Hajimorad, and Michael J. Jeger. “The Evolution of Plant Virus Transmission Pathways.” Journal of Theoretical Biology 396 (2016): 75–89. doi:10.1016/j.jtbi.2016.02.017.

Landscape and Urban Planning

Ager, Alan A., Michelle A. Day, Karen C. Short, and Cody R. Evers. “Assessing the Impacts of Federal Forest Planning on Wildfire Risk Mitigation in the Pacific Northwest, USA.” Landscape and Urban Planning 147 (2016): 1–17. doi:10.1016/j.landurbplan.2015.11.007.

Lee, Yohan, Claire A. Montgomery, and Jeffrey D. Kline. “The Influence of Age-Specific Migration on Housing Growth in the Rural Midwest (USA).” Landscape and Urban Planning 148 (2016): 68–79. doi:10.1016/j.landurbplan.2015.12.005.

Fischer, A. Paige, Ken Vance-Borland, Lorien Jasny, Kerry E. Grimm, and Susan Charnley. “A Network Approach to Assessing Social Capacity for Landscape Planning: The Case of Fire-Prone Forests in Oregon, USA.” Landscape and Urban Planning 147 (2016): 18–27. doi:10.1016/j.landurbplan.2015.10.006.

Landscape Ecology

Hewitt, Rebecca E., Alec P. Bennett, Amy L. Breen, Teresa N. Hollingsworth, D. Lee Taylor, F. Stuart Chapin, and T. Scott Rupp. “Getting to the Root of the Matter: Landscape Implications of Plant-Fungal Interactions for Tree Migration in Alaska.” Landscape Ecology 31, no. 4 (May 14, 2016): 895–911. doi:10.1007/s10980-015-0306-1.

Measurement

Liénard, Jean, Andre Vogs, Demetrios Gatziolis, and Nikolay Strigul. “Embedded, Real-Time UAV Control for Improved, Image-Based 3D Scene Reconstruction.” Measurement 81 (2016): 264–69. doi:10.1016/j.measurement.2015.12.014.

Mycologia

Hobbie, Erik A., Samuel F. Rice, Nancy S. Weber, and Jane E. Smith. “Isotopic Evidence Indicates Saprotrophy in Post-Fire Morchella in Oregon and Alaska.” Mycologia 108, no. 4 (July 20, 2016): 638–45. doi:10.3852/15-281.

Mycorrhiza

Hobbie, Erik A., Samuel F. Rice, Nancy S. Weber, and Jane E. Smith. “Isotopic Evidence Indicates Saprotrophy in Post-Fire Morchella in Oregon and Alaska.” Mycologia 108, no. 4 (July 20, 2016): 638–45. doi:10.3852/15-281.

Natural Areas Journal

DeBano, Sandra J., Samantha M. Roof, Mary M. Rowland, and Lauren A. Smith. “Diet Overlap of Mammalian Herbivores and Native Bees: Implications for Managing Co-Occurring Grazers and Pollinators.” Natural Areas Journal 36, no. 4 (October 2016): 458–77. doi:10.3375/043.036.0412.

Northwestern Naturalist

Moriarty, Katie M, John D Bailey, Sharon E Smythe, and Jake Verschuyl. “Distribution of Pacific Marten in Coastal Oregon.” Northwestern Naturalist 97, no. 2 (January 2016): 71–81. doi:10.1898/NWN16-01.1.

Moriarty, Katie M, John D Bailey, Sharon E Smythe, and Jake Verschuyl. “Distribution of Pacific Marten in Coastal Oregon.” Northwestern Naturalist 97, no. 2 (January 2016): 71–81. doi:10.1898/NWN16-01.1.

Oecologia

Long, Ryan A., R. T. Bowyer, Warren P. Porter, Paul Mathewson, Kevin L. Monteith, Scott L. Findholt, Brian L. Dick, and John G. Kie. “Linking Habitat Selection to Fitness-Related Traits in Herbivores: The Role of the Energy Landscape.” Oecologia 181, no. 3 (July 22, 2016): 709–20. doi:10.1007/s00442-016-3604-7.

Bell, David M., and James S. Clark. “Seed Predation and Climate Impacts on Reproductive Variation in Temperate Forests of the Southeastern USA.” Oecologia 180, no. 4 (April 8, 2016): 1223–34. doi:10.1007/s00442-015-3537-6.

Plant and Soil

Slesak, Robert A., Timothy B. Harrington, and Anthony W. D’Amato. “Invasive Scotch Broom Alters Soil Chemical Properties in Douglas-Fir Forests of the Pacific Northwest, USA.” Plant and Soil 398, no. 1–2 (January 14, 2016): 281–89. doi:10.1007/s11104-015-2662-7.

PLOS ONE

Lorenz, Teresa J., Martin G. Raphael, Thomas D. Bloxton, RJ van Aarde, T Duchesne, JS Mao, and Y Watanuki. “Marine Habitat Selection by Marbled Murrelets (Brachyramphus Marmoratus) during the Breeding Season.” Edited by Christian Andrew Hagen. PLOS ONE 11, no. 9 (September 28, 2016): e0162670. doi:10.1371/journal.pone.0162670.

Xie, Gisselle Yang, Deanna H. Olson, Andrew R. Blaustein, PTJ Johnson, SH Paull, and S Young. “Projecting the Global Distribution of the Emerging Amphibian Fungal Pathogen, Batrachochytrium Dendrobatidis, Based on IPCC Climate Futures.” Edited by Stefan Lötters. PLOS ONE 11, no. 8 (August 11, 2016): e0160746. doi:10.1371/journal.pone.0160746.

Schroeder, Hilke, Richard Cronn, Yulai Yanbaev, Tara Jennings, Malte Mader, Bernd Degen, and Birgit Kersten. “Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. Sect. Quercus).” Edited by Dusan Gomory. PLOS ONE 11, no. 6 (June 28, 2016): e0158221. doi:10.1371/journal.pone.0158221.

Edwards, Patrick M., S Johnson, L Sobota, J Banks, and B Gray. “The Value of Long-Term Stream Invertebrate Data Collected by Citizen Scientists.” Edited by Stefano Goffredo. PLOS ONE 11, no. 4 (April 27, 2016): e0153713. doi:10.1371/journal.pone.0153713.

Averett, Joshua P., Bruce McCune, Catherine G. Parks, Bridgett J. Naylor, Tim DelCurto, Ricardo Mata-González, and BD Maxwell. “Non-Native Plant Invasion along Elevation and Canopy Closure Gradients in a Middle Rocky Mountain Ecosystem.” Edited by RunGuo Zang. PLOS ONE 11, no. 1 (January 29, 2016): e0147826. doi:10.1371/journal.pone.0147826.

Gompper, Matthew E., Damon B. Lesmeister, Justina C. Ray, Jay R. Malcolm, Roland Kays, and GM Thompson. “Differential Habitat Use or Intraguild Interactions: What Structures a Carnivore Community?” Edited by Aaron W. Reed. PLOS ONE 11, no. 1 (January 5, 2016): e0146055. doi:10.1371/journal.pone.0146055.

Fortin, Jennifer K., Karyn D. Rode, Grant V. Hilderbrand, James Wilder, Sean Farley, Carole Jorgensen, and Bruce G. Marcot. “Impacts of Human Recreation on Brown Bears (Ursus Arctos): A Review and New Management Tool.” Edited by Daniel E Crocker. PLOS ONE 11, no. 1 (January 5, 2016): e0141983. doi:10.1371/journal.pone.0141983.

Proceedings of the National Academy of Sciences of the United States of America

Restaino, Christina M, David L Peterson, and Jeremy Littell. “Increased Water Deficit Decreases Douglas Fir Growth throughout Western US Forests.” Proceedings of the National Academy of Sciences of the United States of America 113, no. 34 (August 23, 2016): 9557–62. doi:10.1073/pnas.1602384113.

Simkin, Samuel M, Edith B Allen, William D Bowman, Christopher M Clark, Jayne Belnap, Matthew L Brooks, Brian S Cade, et al. “Conditional Vulnerability of Plant Diversity to Atmospheric Nitrogen Deposition across the United States.” Proceedings of the National Academy of Sciences of the United States of America 113, no. 15 (April 12, 2016): 4086–91. doi:10.1073/pnas.1515241113.

Rangeland Ecology & Management

Wright, Clinton S., RJ Mitchell, JJ Hendricks, LR Boring, CW Berisford, J Aurell, A Holder, et al. “Models for Predicting Fuel Consumption in Sagebrush-Dominated Ecosystems.” Rangeland Ecology & Management 66, no. 3 (May 2013): 254–66. doi:10.2111/REM-D-12-00027.1.

Remote Sensing of Environment

Gregoire, Timothy G., Erik Næsset, Ronald E. McRoberts, Göran Ståhl, Hans-Erik Andersen, Terje Gobakken, Liviu Ene, and Ross Nelson. “Statistical Rigor in LiDAR-Assisted Estimation of Aboveground Forest Biomass.” Remote Sensing of Environment 173 (2016): 98–108. doi:10.1016/j.rse.2015.11.012.

Scandinavian Journal of Forest Research

Gregoire, Timothy G., Erik Næsset, Ronald E. McRoberts, Göran Ståhl, Hans-Erik Andersen, Terje Gobakken, Liviu Ene, and Ross Nelson. “Statistical Rigor in LiDAR-Assisted Estimation of Aboveground Forest Biomass.” Remote Sensing of Environment 173 (2016): 98–108. doi:10.1016/j.rse.2015.11.012.

Science of The Total Environment

Syring, John V., Jacob A. Tennessen, Tara N. Jennings, Jill Wegrzyn, Camille Scelfo-Dalbey, and Richard Cronn. “Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome.” Frontiers in Plant Science 7 (April 21, 2016): 484. doi:10.3389/fpls.2016.00484.

Chapin, F. S., Teresa N. Hollingsworth, F. Stuart Chapin III, D. Lee Taylor, JR Key, AH Lloyd, AD McGuire, TS Rupp, AH Lynch, and JP Schimel. “Role of Land-Surface Changes in Arctic Summer Warming.” Science 310, no. 5748 (October 28, 2005): 657–60. doi:10.1126/science.1117368.

Hicks, Christina C., Arielle Levine, Arun Agrawal, Xavier Basurto, Sara J. Breslow, Courtney Carothers, Susan Charnley, et al. “Engage Key Social Concepts for Sustainability.” Science 352, no. 6281 (2016). http://science.sciencemag.org/content/352/6281/38.

Frey, Sarah J. K., Adam S. Hadley, Sherri L. Johnson, Mark Schulze, Julia A. Jones, and Matthew G. Betts. “Spatial Models Reveal the Microclimatic Buffering Capacity of Old-Growth Forests.” Science Advances 2, no. 4 (2016). http://advances.sciencemag.org/content/2/4/e1501392.

Wu, Zhiwei, Hong S. He, Zhihua Liu, Yu Liang, M Solino, P Duce, D Spano, and Z Zhu. “Comparing Fuel Reduction Treatments for Reducing Wildfire Size and Intensity in a Boreal Forest Landscape of Northeastern China.” Science of The Total Environment 454–455, no. Suppl (June 2013): 30–39. doi:10.1016/j.scitotenv.2013.02.058.

Donovan, Geoffrey H., Sarah E. Jovan, Demetrios Gatziolis, Igor Burstyn, Yvonne L. Michael, Michael C. Amacher, and Vicente J. Monleon. “Using an Epiphytic Moss to Identify Previously Unknown Sources of Atmospheric Cadmium Pollution.” Science of The Total Environment 559 (2016): 84–93. doi:10.1016/j.scitotenv.2016.03.182.

Science Advances

Frey, Sarah J. K., Adam S. Hadley, Sherri L. Johnson, Mark Schulze, Julia A. Jones, and Matthew G. Betts. “Spatial Models Reveal the Microclimatic Buffering Capacity of Old-Growth Forests.” Science Advances 2, no. 4 (2016). http://advances.sciencemag.org/content/2/4/e1501392.

Science of The Total Environment

Wu, Zhiwei, Hong S. He, Zhihua Liu, Yu Liang, M Solino, P Duce, D Spano, and Z Zhu. “Comparing Fuel Reduction Treatments for Reducing Wildfire Size and Intensity in a Boreal Forest Landscape of Northeastern China.” Science of The Total Environment 454–455, no. Suppl (June 2013): 30–39. doi:10.1016/j.scitotenv.2013.02.058.

Donovan, Geoffrey H., Sarah E. Jovan, Demetrios Gatziolis, Igor Burstyn, Yvonne L. Michael, Michael C. Amacher, and Vicente J. Monleon. “Using an Epiphytic Moss to Identify Previously Unknown Sources of Atmospheric Cadmium Pollution.” Science of The Total Environment 559 (2016): 84–93. doi:10.1016/j.scitotenv.2016.03.182.

The Journal of Real Estate Finance and Economics

Wu, JunJie, Wenchao Xu, and Ralph J. Alig. “How Do the Location, Size and Budget of Open Space Conservation Affect Land Values?” The Journal of Real Estate Finance and Economics 52, no. 1 (January 21, 2016): 73–97. doi:10.1007/s11146-015-9506-3.

The Journal of Wildlife Management

Moriarty, Katie M., Clinton W. Epps, and William J. Zielinski. “Forest Thinning Changes Movement Patterns and Habitat Use by Pacific Marten.” The Journal of Wildlife Management 80, no. 4 (May 2016): 621–33. doi:10.1002/jwmg.1060.

Transactions of the American Fisheries Society

Moriarty, Katie M., Clinton W. Epps, and William J. Zielinski. “Forest Thinning Changes Movement Patterns and Habitat Use by Pacific Marten.” The Journal of Wildlife Management 80, no. 4 (May 2016): 621–33. doi:10.1002/jwmg.1060.

Urban Forestry & Urban Greening

Strunk, Jacob L., John R. Mills, Paul Ries, Hailemariam Temesgen, and Lacey Jeroue. “An Urban Forest-Inventory-and-Analysis Investigation in Oregon and Washington.” Urban Forestry & Urban Greening 18 (2016): 100–109. doi:10.1016/j.ufug.2016.04.006.

Mills, John R., Patrick Cunningham, and Geoffrey H. Donovan. “Urban Forests and Social Inequality in the Pacific Northwest.” Urban Forestry & Urban Greening 16 (2016): 188–96. doi:10.1016/j.ufug.2016.02.011.

Richardson, Jeffrey J, and L. Monika Moskal. “Urban Food Crop Production Capacity and Competition with the Urban Forest.” Urban Forestry & Urban Greening 15 (2016): 58–64. doi:10.1016/j.ufug.2015.10.006.

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FYyy-qq-pnw-pub-update_tasks.xlsx

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About Tanner Jessel

I am a recent M.S. in Information Science graduate from the University of Tennessee School of Information Science. I was formerly a graduate research assistant funded by DataONE (Data Observation Network for Earth). Prior, I worked for four years as a content lead and biodiversity scientist with the U.S. Geological Survey's Biodiversity Informatics Program. Building on my work experience in biodiversity and environmental informatics, my work with DataONE focused on exploring the nature of scientific collaborations necessary for scientific inquiry. I also conducted research concerning user experience and usability, and assisted in development of member nodes with an emphasis on spatial data and infrastructure. I assisted with research designed to understand sociocultural issues within collaborative research communities. Through August 1, 2014, I was based at the Center for Information and Communication Studies at the University of Tennessee School of Information Science in Knoxville, Tennessee.

Posted on April 25, 2017, in Uncategorized, USFS Research. Bookmark the permalink. Leave a comment.

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